Study aid only. Verify against current guidelines before clinical use.

Hypercoagulable states

Benign Hematology
Hypercoagulable states

Virchow triad, pathogenesis of thrombosis

  • 1. Endothelial injury / dysfunction: trauma, surgery, smoking, atherosclerosis, indwelling lines, vasculitis, sepsis.
  • 2. Stasis / venous flow disturbance: immobility, surgery, hospitalization, paralysis, pregnancy, obesity, congestive heart failure, atrial fibrillation.
  • 3. Hypercoagulability: inherited thrombophilias, acquired conditions (cancer, antiphospholipid syndrome, OCPs/HRT, pregnancy, MPNs, PNH, nephrotic syndrome, IBD, smoking).

Inherited thrombophilias

  • Factor V Leiden (FVL): Arg506Gln; ~5% Caucasian; ~3 to 7-fold ↑ VTE heterozygous; ~18-fold homozygous (older estimates up to 80-fold).
  • Prothrombin G20210A (PGM): ~2% Caucasian; ~3-fold ↑ VTE heterozygous; homozygous rare with increased but poorly quantified risk.
  • Protein C deficiency: autosomal dominant; type I quantitative or II dysfunctional; 4 to 8-fold ↑ VTE; neonatal purpura if homozygous.
  • Protein S deficiency: autosomal dominant; type I (↓ total and free), II (normal antigen, ↓ activity), III (normal total, ↓ free); 2 to 8-fold ↑ VTE.
  • Antithrombin (AT) deficiency: most thrombotic (10-fold ↑ VTE); type I quantitative or II dysfunctional; heparin resistance hallmark.

Inherited thrombophilias, mechanism and how to test

  • Factor V Leiden (FVL): Arg506Gln substitution makes factor Va resistant to cleavage by activated protein C (APC). Test with APC resistance functional assay, confirm with genetic testing (PCR) if positive. Warfarin / DOACs do not affect mutation testing. FVL accounts for >90% of APC resistance (others: FV Cambridge, Liverpool, Bonn, and Nara mutations, protein S deficiency, APLS, pregnancy, and cancer).
  • Prothrombin G20210A: 3' UTR mutation increases prothrombin (factor II) levels ~30%. Genetic test by PCR (no functional assay); do not check antigen or activity levels.
  • Antithrombin deficiency: type I (low antigen + activity); type II (low activity, normal antigen, defective protein). Acute thrombosis and acute heparin can lower AT, so re-check at 2 to 4 weeks off heparin.
  • Protein C / S deficiency: type I (low antigen + activity); type II (normal antigen, low activity). Low free protein S more sensitive than total. Acute thrombosis, warfarin, OCPs, pregnancy, liver disease can lower levels.
  • Coagulation factor levels do not correlate with mutation: e.g., FVL patients have normal factor V level and activity.

The "Seven strong thrombophilias" framework

  • Strong (high-risk) thrombophilias that may justify long-term anticoagulation:
  • 1. Antiphospholipid syndrome (APS), especially triple-positive.
  • 2. Antithrombin deficiency.
  • 3. Protein C deficiency.
  • 4. Protein S deficiency.
  • 5. Homozygous factor V Leiden.
  • 6. Homozygous prothrombin G20210A.
  • 7. Compound heterozygous FVL + prothrombin G20210A.

Relative risk of first VTE and of recurrence by thrombophilia

Thrombophilias: relative risk of first VTE and recurrence
ThrombophiliaRR increase for first VTERR for recurrence
No thrombophiliaReference group (RR 1)
Prothrombin G20210A, heterozygous

ASH-SEP: RR 2 to 3

ASH review: 3.8 (3.0 to 4.9)

1.45 (0.96 to 2.21), not significant
FVL, heterozygous

ASH-SEP: RR 3 to 5

ASH review: 4.9 (4.1 to 5.9)

1.56 (1.14 to 2.12), statistically significant but modest
Prothrombin G20210A, homozygousInsufficient dataInsufficient data
FVL, homozygous

ASH-SEP: RR 18

ASH review: 18 (4.1 to 41)

  • 2.65 (1.18 to 5.97) Segal, JAMA 2009
  • 1.2 (0.50 to 2.6) Lijfering, Circulation 2010
  • Remained an increased recurrence risk factor on subsequent meta-analysis

Double: heterozygous G20210A

plus heterozygous FVL

ASH review: 20 (11.1 to 36.1)
  • 4.81 (0.50 to 46.3) Segal, JAMA 2009
  • 1.0 (0.6 to 1.9) Lijfering, Circulation 2010
  • Remained an increased recurrence risk factor on subsequent meta-analysis
Protein S deficiency

ASH-SEP: RR 1 to 10

ASH review: 30.6 (26.9 to 55.3)

  • ASH-SEP: RR 1.9 to 2.6 (AT), 1.4 to 1.8 (C), 1.0 to 1.4 (S)
  • ASH review: 2.8 (2.0 to 4.0) Lijfering, Circulation 2010
Protein C deficiency

ASH-SEP: RR 4 to 6.5

ASH review: 24.1 (13.7 to 42.4)

Antithrombin deficiency

ASH-SEP: RR 5 to 10

ASH review: 28.2 (13.5 to 58.6)

APLS
  • APLA: 1.41 (0.99 to 2.0) Garcia, Blood, 2013
  • ACA: 1.53 (0.76 to 3.11) Garcia, Blood, 2013
  • LA: 2.83 (0.83 to 9.64) Garcia, Blood, 2013
  • APLA syndrome: ~2.0-fold Kearon, Chest, 2012

Acquired hypercoagulable states

  • Antiphospholipid syndrome (APS): ≥1 clinical + ≥1 lab criterion; triple-positive (LA + aCL + aβ2GPI) = highest risk; warfarin INR 2 to 3 (DOACs failed).
  • Myeloproliferative neoplasm (MPN): JAK2 V617F (PV ~95%, plus exon 12; ET/PMF ~50 to 60%); CALR or MPL drive ET/PMF, not PV; high thrombotic risk; cytoreductive + aspirin ± anticoagulation.
  • Paroxysmal nocturnal hemoglobinuria (PNH): complement-mediated hemolysis; thrombosis (esp. venous/hepatic, Budd-Chiari) even with normal Plt; complement inhibition is central to reducing thrombosis; primary anticoagulant prophylaxis is individualized, not routine.
  • Heparin-induced thrombocytopenia (HIT): type II, immune; anti-PF4/H IgG, thrombocytopenia paradox + thrombosis; stop heparin, start argatroban/fondaparinux.
  • Malignancy: TF expression + microparticles, VTE; cancer itself is a high-risk VTE factor.
  • Nephrotic syndrome: ↑ fibrinogen, ↓ AT/protein S, VTE risk ↑ if serum albumin <2.5 g/dL.
  • OCP/HRT: 3 to 4-fold ↑ VTE; higher with 3rd/4th gen; avoid if inherited thrombophilia.
  • Pregnancy/postpartum: ↑ factors II, VII, VIII, X; ↓ protein S/fibrinolysis; postpartum peak weeks 1 to 6.
  • Immobilization: surgery, ICU, flights; transient ↑ VTE; reversible with mobilization.

Acquired hypercoagulability, management pearls

  • Antiphospholipid syndrome: triple-positive highest risk; warfarin INR 2 to 3.
  • MPN: risk-adapted; low-risk PV = phlebotomy + aspirin, low-risk ET = aspirin; cytoreduction + aspirin for high-risk; consider anticoagulation if prior thrombosis.
  • Malignancy: Khorana score ≥2 starting systemic therapy, consider apixaban/rivaroxaban/LMWH prophylaxis after bleeding-risk assessment; active cancer = indefinite anticoagulation if VTE.
  • Nephrotic syndrome: albumin <2.5 g/dL + proteinuria >3.5 g/day, prophylaxis consideration.
  • OCP/HRT: 3 to 4-fold ↑ VTE; counsel on contraindications + smoking cessation.
  • Postpartum (6 weeks): peak thrombotic window; prophylaxis if additional risk factors.

Risk factors for first VTE

  • Strong/major (OR >10): fracture of hip/leg, hip/knee replacement, major general surgery, major trauma, spinal cord injury, hospitalization for acute illness; previous VTE (strongest predictor of recurrent VTE).
  • Moderate (OR 2 to 9): pregnancy, postpartum, OCP/HRT, cancer, indwelling central venous catheter, chemotherapy, congestive heart failure, paralysis, thrombophilia, tamoxifen.
  • Weak (OR <2): bed rest >3 d, immobility (sitting, long-haul travel), age, obesity, varicose veins, pregnancy 1st trimester only.

Risk factors for first arterial thrombosis

  • Atherosclerotic (CV): age, smoking, HTN, hyperlipidemia, diabetes, obesity, family history.
  • Hematologic / thrombophilic (less common, especially in younger pts): APS, paradoxical embolism (PFO), hyperhomocysteinemia, MPN with thrombocytosis, PNH, HIT, vasculitis, sickle cell, severe inherited thrombophilia.

Who NOT to test for thrombophilia (generally)

  • Provoked first VTE with transient risk factor (surgery, trauma, hospitalization, immobility, OCP/HRT, pregnancy): testing rarely changes management (anticoagulate at least 3 months; for pregnancy-associated VTE continue through pregnancy and at least 6 weeks postpartum).
  • Active malignancy: cancer drives thrombosis; thrombophilia testing does not change anticoagulation duration.
  • Inflammatory bowel disease (active): IBD itself drives thrombosis.
  • Myeloproliferative disorders: test for JAK2 if not already known; not for inherited thrombophilias.
  • HIT with thrombosis: diagnose HIT; inherited thrombophilias do not change management.
  • Retinal vein occlusion; pregnancy complications such as preeclampsia: no consistent association with inherited thrombophilias; testing not recommended.
  • Routine screening of asymptomatic relatives: controversial; counseling about provocation avoidance is reasonable; routine prophylaxis not recommended.

When to consider thrombophilia testing

Two-column sorter of when to consider thrombophilia testing versus when generally not to test, with the seven strong thrombophilias that may justify long-term anticoagulation listed below.
Who to test for thrombophilia, and the seven strong thrombophilias testing aims to find. Tap to enlarge.
  • Unprovoked VTE in a young patient (<45).
  • Strong family history of VTE (especially first-degree relatives at young ages).
  • Recurrent VTE.
  • Unusual sites (cerebral, splanchnic, hepatic vein, upper extremity unprovoked).
  • Pregnancy losses (recurrent, APS).
  • Warfarin-induced skin necrosis (protein C deficiency).
  • Purpura fulminans in a newborn (homozygous protein C or S deficiency).

Thrombophilia tests for VTE, what to order

  • Factor V Leiden mutation and activated protein C resistance.
  • Prothrombin G20210A mutation.
  • Protein C activity.
  • Protein S activity, free protein S antigen.
  • Antithrombin activity.
  • Anticardiolipin IgG and IgM antibodies.
  • Anti-β2-glycoprotein I IgG and IgM antibodies.
  • Lupus anticoagulant.
  • Hemoglobin, platelet count, JAK2 V617F and PNH (in splanchnic vein thrombosis).
  • Lipoprotein(a) (in pediatrics).

How to test (timing matters)

Matrix showing which thrombophilia tests are reliable on anticoagulation and how warfarin, heparin, DOACs, acute thrombosis, liver disease and estrogen shift protein C, protein S, antithrombin (including assay-dependent false elevation by DOACs) and lupus anticoagulant results.
Thrombophilia test timing: what anticoagulation and acquired states do to each assay. Tap to enlarge.
  • Tests largely NOT influenced by anticoagulation (start with these; clotting-based lupus anticoagulant is the exception, see below):
    • Lupus anticoagulant (LA): clotting-based, so it IS affected by heparin, warfarin, and DOACs (false positives); interpret with caution (see below).
    • Anti-cardiolipin and anti-β2GPI antibodies.
    • Factor V Leiden (genetic; APC resistance assay can be affected by DOAC).
    • Prothrombin G20210A (genetic).
  • Tests AFFECTED by anticoagulation (defer 2 to 4 weeks off therapy):
    • Protein C and S activity (warfarin lowers; DOAC may artifactually elevate).
    • Antithrombin activity (heparin lowers).
    • Functional clotting-based LA tests (DOAC interferes, can be falsely positive).
    • Factor levels do NOT correlate with mutation; e.g., FVL patients have normal factor V level/activity.

Protein C, S, and AT: activity testing and acquired deficiency

  • Check protein C, S, and AT activity; free protein S antigen can be added. Antigen level alone can miss patients with normal antigen but low activity (type II). Diagnose by functional activity, not routine mutation testing (protein C has >100 variants, protein S similar); reserve selective gene testing for a confirmed deficiency when it will guide management or family evaluation.
  • Acquired causes of low levels:
    • Liver disease (C, S, AT): ↓ synthesis.
    • Warfarin therapy (C, S): ↓ levels.
    • Estrogens, pregnancy (S): ↓ levels.
    • Inflammatory diseases (S): ↓ levels.
    • Heparin therapy (AT): ↓.
    • Acute thrombosis (S, AT): ↓.
    • DOACs: ↑ C and S activity (falsely elevated).
  • Protein S activity is typically low on estrogens (OCP, pregnancy, post-menopausal hormone therapy), during acute thrombosis, on warfarin, and with liver disease; this does not reflect inherited deficiency. Warfarin must be discontinued for ≥3 weeks before reliable protein S levels can be obtained.
  • Treatment: AT concentrate is very rarely used; protein C concentrate for severe neonatal protein C deficiency (very rare).

Intermediate-risk thrombophilia workup algorithm

Flowchart of the intermediate-risk thrombophilia workup: D-dimer and anticoagulation-independent tests at about 3 months, continue anticoagulation if D-dimer is positive, otherwise stop, recheck D-dimer at 4 weeks and complete protein C, S, AT and lupus anticoagulant testing; a strong thrombophilia found then reopens the duration decision.
D-dimer guided thrombophilia workup in intermediate-risk VTE. Tap to enlarge.
  • In the intermediate-risk group, at about 3 months on anticoagulation check D-dimer and start the thrombophilia workup with tests not influenced by anticoagulation (antiphospholipid antibodies: anticardiolipin and anti-β2GPI; FVL; and prothrombin G20210A).
  • If those are negative, D-dimer is low, and provoking factors, recurrence history, and bleeding risk favor stopping, stop anticoagulation, recheck D-dimer in 4 weeks, and complete the workup with protein C, protein S, AT activity, and lupus anticoagulant.
  • Base duration on provoking factors, recurrence history, and bleeding risk; negative thrombophilia testing and low D-dimer do not establish that stopping is safe after unprovoked VTE. If D-dimer is positive while on anticoagulation, or becomes positive during the 4-week off-therapy window, continue long-term anticoagulation.

D-dimer in management

  • After VTE provoked by a major transient risk factor: stop anticoagulation at 3 months; D-dimer is not needed for this decision.
  • After unprovoked VTE: D-dimer ~4 weeks AFTER stopping anticoagulation; if elevated, consider resuming (PROLONG). Note HERDOO2/REVERSE used D-dimer measured while ON anticoagulation.

Special populations

  • Pregnancy + inherited thrombophilia: risk varies by mutation. AT deficiency, homozygous FVL, and combined defects, high risk, LMWH prophylaxis throughout pregnancy + 6 weeks postpartum. Heterozygous FVL or PT G20210A alone, individualized.
  • Recurrent pregnancy loss + APS: prophylactic LMWH + low-dose ASA throughout pregnancy.
  • Women considering OCP/HRT with FH of VTE: weigh risk versus benefit; do not routinely screen for thrombophilia before OCP based on family history of VTE alone when the familial defect is unknown; consider selective testing only for a known high-risk familial deficiency (AT, protein C, protein S) that would change estrogen use.

High yield

  • Provoked VTE, 3 months, stop. Do not test for thrombophilia.
  • Unprovoked VTE, assess bleeding risk. If low, consider indefinite anticoagulation. Thrombophilia testing rarely changes duration.
  • Triple-positive APS = warfarin (target INR 2 to 3); DOACs inferior (TRAPS trial).
  • Antithrombin deficiency: "heparin resistance", give AT concentrate or FFP.
  • Protein C deficiency: warfarin-induced skin necrosis. Bridge with heparin.
  • Lupus anticoagulant prolongs aPTT in vitro but causes thrombosis in vivo.
  • Hyperhomocysteinemia: B vitamin replacement lowers homocysteine but does NOT lower VTE risk (VITRO, NORVIT, HOPE-2).
  • Catastrophic APS: anticoagulation + steroids + IVIG/PEX ± rituximab.
  • Splanchnic vein thrombosis: screen for MPN (JAK2 V617F), PNH, malignancy, cirrhosis.
  • Cerebral venous thrombosis: anticoagulate even with hemorrhagic infarct; workup OCP, pregnancy, mastoiditis, thrombophilia.
Veli Bakalov MD, Board Review Notes 2026

Practice guidelines

Official guidelines on each society's website (opens in a new tab). NCCN may ask for a free login.