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Bone marrow failure syndromes

Malignant Hematology·Bone marrow failure syndromes·2026
Bone marrow failure syndromes

Overview

  • Definition: an intrinsic disorder of the bone marrow with disrupted hematopoietic stem and progenitor cell homeostasis and inadequate production of white cells, red cells, and/or platelets, leading to cytopenias in one or more lineages. May be inherited (germline) or acquired.
  • Stem cell biology (perspective): humans have roughly 10,000 to 20,000 true HSCs; each HSC divides only about once every 50 weeks yet is the origin of the ~100 billion new blood cells produced daily. One can live a lifetime with <10% of this HSC pool (as in BMT recipients).
  • Distinguish AA vs MDS vs hereditary: use bone marrow cellularity, cytogenetics, molecular profile (clonal hematopoiesis), age, family history, and syndromic features.

Evaluation

  • History and physical: infections, drug and toxin exposure, family history, height/weight, congenital anomalies.
  • Blood testing: CBC, differential, blood smear review, Hgb F%, LFTs, BUN/Cr, type and screen, DAT, PT/PTT.
  • Bone marrow aspirate and biopsy: assess cellularity, dyspoiesis, M:E ratio, megakaryocyte number and morphology, iron stain, reticulin stain (fibrosis), and immunostains (e.g., CD34).
  • Cytogenetics: metaphase karyotype plus FISH for chromosomes 5, 7, 8, 13; NGS panel for somatic mutations (increasingly standard); SNP array at some centers.
  • Germline testing: skin/buccal fibroblasts for germline genetic testing.
  • HLA typing: patient and siblings.
  • PNH flow cytometry: CD55/CD59 on RBCs and granulocytes, FLAER on granulocytes.
  • Telomere length: age-adjusted lymphocyte telomere length by flow-FISH (6-panel, lymphocyte subsets) if inherited telomere disease suspected; granulocytes may supplement but not replace lymphocyte testing.
Bone marrow failure: evaluation
BMF typeCategoryEvaluation
Secondary (acquired)Viral studiesHIV, hepatitis, parvovirus, EBV, CMV
Metabolic deficienciesSerum folate, B12, copper, zinc
Autoimmune / immune deficiencyImmunoglobulins, B/T cell panels, ANA, thyroid studies, anti-neutrophil and anti-platelet antibodies
Primary (inherited)Fanconi anemiaChromosomal breakage testing (DEB or MMC)

Short telomere diseases

(dyskeratosis congenita)

Telomere length analysis (6-panel flow-FISH)

Acquired aplastic anemia (AA)

  • Pathogenesis: T-cell mediated immune destruction of hematopoietic stem cells.
  • Incidence: 2 to 8 cases per million per year, with two peaks (adolescents/young adults ~15 to 25 yr and older adults >60 yr), but can occur at any age.
  • Causes / triggers:
    • Idiopathic (most common).
    • Drugs: chloramphenicol, sulfonamides, NSAIDs, anti-thyroid drugs, anti-epileptics (carbamazepine, phenytoin), gold, ticlopidine, clozapine.
    • Toxins: benzene, pesticides, radiation.
    • Viruses: hepatitis (typically seronegative, "post-hepatitis aplastic anemia"), HIV, EBV, parvovirus B19 (transient red cell aplasia, not AA).
    • Pregnancy: rarely.
    • Autoimmune disease: SLE, RA.
    • Pre-leukemic: consider clonal evolution to MDS/AML; PNH overlap.
  • Diagnosis: cytopenias plus a bone marrow hypocellular for age (after excluding other causes); the <25%, or 25 to 50% with <30% hematopoietic cells, cutoffs grade severity (Camitta).
Aplastic anemia severity (Camitta criteria)
  • Severe AA (SAA): BM cellularity <25% (or 25 to 50% with <30% residual hematopoietic cells) AND ≥2 of 3: ANC <500/µL, platelets <20K/µL, reticulocytes <60K/µL (or <1% corrected).
  • Very severe AA (vSAA): SAA criteria plus ANC <200/µL, worst prognosis without treatment.
  • Non-severe (moderate) AA: cytopenias not meeting SAA criteria; less urgent treatment decisions.
  • Workup essentials:
    • PNH flow cytometry on RBCs and granulocytes; small clones found in ~50%; significant based on hemolysis, thrombosis, or PNH symptoms rather than size alone; classical hemolytic PNH usually has larger clones (often >50%), while small subclinical clones (AA/PNH overlap) are monitored.
    • Fanconi anemia and telomere disease functional screening must be complete before immunosuppression, especially if young (<40), family history, syndromic features, or refractory disease.
    • Cytogenetics: normal in classic AA; abnormal cytogenetics (esp. -7, +8, complex) suggests MDS.
    • Molecular panel: clonal hematopoiesis is common in AA but does not rule out the diagnosis.

Treatment of acquired aplastic anemia

Treatment algorithm (severe AA, age 40 and under)
  • HLA-identical sibling donor available: proceed with matched sibling donor transplant. Cure rate ~70 to 90% in patients <30 years.
  • No HLA-identical sibling: proceed with immunosuppressive therapy (IST).
    • If IST works and there is no clonal evolution (no progression to MDS): wean immunosuppression and observe.
    • If IST is primary refractory, or there is progression to MDS/AML: proceed with haploidentical or MUD transplant. Relapse after response is usually salvaged first by resuming/increasing CsA +/- eltrombopag or repeat IST; transplant depends on severity, response, age, and donor.
  • Stem cell source: bone marrow is preferred over mobilized peripheral blood in AA. Mobilized peripheral blood carries a higher rate of GVHD. Unlike allo-HSCT for malignancy (where GVHD gives a graft-versus-tumor benefit), in AA GVHD is to be avoided at all costs because it is associated with lower OS and lower quality of life.
Immunosuppressive therapy (IST) for SAA
  • Before starting IST: complete Fanconi anemia and telomere disease functional screening; complete HLA typing of patient and siblings (IST is first-line for older or transplant-ineligible patients even if a matched sibling donor exists); goal is to start within 3 to 4 weeks of the diagnostic bone marrow.
  • Supportive care during IST: antifungal prophylaxis if ANC consistently <500; HSV prophylaxis x 1 month (some centers); PJP prophylaxis while on cyclosporine (e.g., monthly pentamidine), not a fixed 3 months. G-CSF has no proven benefit other than reduced hospitalization. Use leukoreduced and irradiated blood products, platelets >10K (higher during ATG), Hb >7 to 8. ATG is given through a central venous catheter with a planned ~1-week admission.
  • Equine ATG (Atgam): 4 to 8 hour IV infusions x 4 days (hospitalization with close monitoring). Equine ATG is superior to rabbit ATG (thymoglobulin) but is not available in some countries. First-line ORR is higher with horse ATG (68% vs 37% for rabbit). h-ATG/CsA 3-month ORR is 60 to 80%. Rabbit ATG is generally reserved for second-line/salvage when transplant is not an option; a repeat r-ATG plus CsA course rescues ~35% of h-ATG-refractory patients.
  • Prednisone: starts with ATG (IV or oral) to prevent serum sickness; it has no role in treating the AA itself. Full dose for 7 to 10 days, then taper over 2 weeks. ATG side effects: severe allergic reactions, anaphylaxis, serum sickness.
  • Cyclosporine A (CsA): twice-daily oral, starts with ATG; trough 200 to 350 ng/mL; full-dose duration varies (6 to 12 months, often 12). Side effects: hypertrichosis, gum overgrowth, kidney dysfunction, hypertension, rarely seizures. About 25% of patients remain chronically CsA dependent; relapse in responders is ~35% by 5 years and is often temporally related to CsA discontinuation or dose reduction.
  • Eltrombopag: synthetic non-peptide TPO receptor agonist. Upfront with IST (ATG/CsA) for up to 6 months is now standard of care (ORR ~85 to 90%, CR 35 to 40% at 6 months) with clonal evolution ~15% at 4 years (high-risk, myeloid malignancy or chromosome 7: 5.7%), not lower than historical IST alone, though it occurs earlier. Single-agent in refractory disease (Desmond et al. Blood 2014): ~40% ORR, 10 to 12% CR, but 19% clonal evolution (most commonly monosomy 7). Pediatric benefit not demonstrated: adding eltrombopag to IST did not improve response or EFS in children (Groarke BJH 2021), though FDA-approved with standard IST for first-line SAA age ≥2.
Monitoring, weaning, and long-term follow-up
  • Response (based on count recovery, goal over 6 to 9 months): Complete response = normal counts (some use platelets >100K/µL). Partial response = transfusion independent, ANC >500. Treatment failure = no ANC recovery (ANC <200) by 3 months, or still transfusion dependent by 6 months.
  • Repeat BM: mainly to screen for MDS; recheck with any significant decline in counts after initial recovery, and before starting alternative treatment if IST fails.
  • Weaning CsA: start 6 to 12 months after initiation; wean by 10% per month or 20 to 25% every 3 months. If counts fall during wean, either resume full-dose CsA or pursue transplant.
  • Long-term: CBC every 1 to 3 months for the first year after stopping IST, then decrease toward yearly (indefinite, as late relapse occurs). Check for PNH clones yearly. Clonal evolution to MDS/AML occurs in ~10 to 15% over 10 years.
  • Failed first IST: a second IST course (r-ATG plus CsA) rescues only ~30 to 35%; in children, failure-free survival after second IST was ~10% vs ~84% with alternative-donor BMT (Kosaka et al. Blood 2008). Consider alternative donor transplant in young patients: unrelated donor if 9/10 or 10/10 match, or haploidentical with post-transplant cyclophosphamide.
  • Transfusion caution: avoid family-member transfusions in patients who may need allo-HSCT (HLA alloimmunization). Use irradiated, CMV-negative, leukoreduced products for HSCT candidates.

PNH overlap and complement inhibition

  • Etiology: acquired mutation in the PIGA gene (Xp22.2) causing loss of GPI-anchored cell surface proteins (including CD55 and CD59). Patients typically develop symptoms or need treatment only with clones >30% of blood cells. Up to 50% of SAA patients have PNH clones, most small (<1%). In patients with hemolysis clones tend to increase over time; subclinical clones may increase, remain stable, decrease, or become undetectable after IST.
  • Transplant: bone marrow transplant is the only definitive cure. With concurrent AA, transplant outcomes resemble AA without PNH; if PNH progresses and marrow cellularity is restored, more intensive transplant has OS ~70%. Complement inhibition prevents hemolysis and thrombosis but does not affect the course of marrow failure.
  • Complement inhibitors: Eculizumab (Soliris, FDA Mar 2007) and ravulizumab (Ultomiris, FDA Dec 2018), anti-C5 mAbs, standard for hemolytic PNH (infusion every 2 to 8 weeks for life). Pegcetacoplan (Empaveli, FDA May 14, 2021), pegylated C3 inhibitor; PEGASUS (Hillmen NEJM 2021) showed superior Hb in patients with persistent anemia on eculizumab. Iptacopan (Fabhalta, FDA Dec 5, 2023), first-in-class oral factor B inhibitor (proximal complement); APPLY-PNH and APPOINT-PNH (NEJM 2024). Danicopan (Voydeya, FDA Mar 29, 2024), oral factor D inhibitor, add-on to ravulizumab/eculizumab for clinically significant extravascular hemolysis (ALPHA, Lee Lancet Haematol 2023). Crovalimab (Piasky, FDA Jun 20, 2024), SC anti-C5 every 4 weeks; COMMODORE-2 (Röth Am J Hematol 2024) non-inferior to eculizumab. Small clones (<10%) without hemolysis do not require treatment. Vaccinate before complement inhibitors: C5 inhibitors (eculizumab, ravulizumab, crovalimab) require meningococcal ACWY plus B; proximal inhibitors (iptacopan, pegcetacoplan, danicopan) also require pneumococcal and Hib.

Pure red cell aplasia (PRCA)

  • Definition: severe normocytic, normochromic anemia with reticulocytopenia and absent erythroid precursors in an otherwise normal bone marrow (other lineages preserved). May be congenital or acquired; more frequent in Asians. DDx: MDS, sideroblastic anemia, DBA, transient erythroblastopenia of childhood (TEC).
  • Pathogenesis: autoantibodies or T lymphocytes targeting early erythroid precursors. Secondary causes: lymphoproliferative disorder (most common is large granular lymphocyte [LGL] leukemia), autoimmune disease, medication, viral infection (parvovirus B19, especially in immunocompromised, sickle cell, HIV, post-transplant), thymoma (~5 to 10% of thymomas), CLL/lymphoma, pregnancy. ESA-induced anti-EPO antibodies are a rare cause.
  • Diagnostic criteria: normochromic, normocytic anemia; absolute reticulocyte count <10,000/µL; normal WBC and platelets (absent concurrent disorders); normocellular marrow with <1% erythroblasts/proerythroblasts and basophilic erythroblasts totaling <5% of nucleated cells.
  • Treatment: RBC transfusion plus immunosuppression for primary PRCA. Cyclosporine (± prednisone) is the most effective first-line option (response ~65 to 85%); oral cyclophosphamide plus prednisone is an alternative; second line azathioprine plus prednisone. Refractory: sirolimus (ORR ~75%) or tacrolimus, rituximab (works in CLL-mediated PRCA), IVIG (especially good for B19), daratumumab, antithymocyte globulin, alemtuzumab (anti-CD52), daclizumab (anti-CD25/IL-2Rα, no longer marketed). For secondary PRCA, treat the underlying malignancy; surgery for thymoma; IVIG for parvovirus.
  • Post-HSCT PRCA: occurs after major ABO-mismatched transplant when recipient isohemagglutinins interfere with donor erythroid engraftment (major ABO mismatch is not a transplant contraindication). More likely with reduced-intensity/reduced-toxicity conditioning (e.g., fludarabine/busulfan); usually self-limited, often resolving spontaneously or after stopping the calcineurin inhibitor (tacrolimus). Rule out parvovirus B19; for severe/prolonged cases consider rituximab, steroids, plasma exchange, or cyclophosphamide.
  • Prognosis: generally good, OS often >10 to 20 years; death is usually from the underlying disorder.

Inherited bone marrow failure syndromes (IBMFS)

  • Share an inability to maintain rapidly dividing cells through defective DNA repair, defective telomere/chromosome maintenance, or defective ribosome/protein synthesis.
Inherited bone marrow failure disorders
SyndromeFeatureDetails
Fanconi anemiaMost common IBMFS Gene(s) / defectDefective FA/BRCA DNA repair; >23 genes, mostly autosomal recessive (FANCB is X-linked). FANCA, FANCC, FANCG most common (~80%). FANCD1 = BRCA2 (biallelic = severe FA with brain tumors).
Clinical cluesShort stature (45%), cafe-au-lait / patchy hyperpigmentation (40%), hypoplastic/​absent thumbs and radius/wrist anomalies (35%), microcephaly (20%), hypogonadism/​hypospadias (males 25%), cognitive delay (10%). Pancytopenia. ↑↑↑ Hb F.
DiagnosisChromosomal breakage with DEB (diepoxybutane) or MMC (mitomycin C) on peripheral blood mononuclear cells (sensitive, specific). Confirm with NGS gene sequencing (guides AML risk and donor selection).
Malignancy riskMarrow failure is the main cause of death; AML risk ↑ ~700-fold, MDS ~6000-fold. Also HNSCC and anogenital SCC.
Treatment
  • Androgens (danazol, oxymetholone) improve counts in ~50% (AEs: peliosis hepatis, hepatic tumors).
  • Allo-HSCT is the only curative option: use reduced-intensity, fludarabine-based conditioning, AVOID full-dose alkylators/​cyclophosphamide/​RT (extreme sensitivity). MSD-BMT OS >80%, MUD OS 60 to 70%.
  • Cancer surveillance (HNSCC, anogenital).
Telomere biology diseaseDyskeratosis congenita Gene(s) / defectDefective telomere maintenance. Childhood/​X-linked: DKC1, TINF2, RTEL1, TERT. Adult-onset: TERT, TERC, RTEL1, PARN.
Clinical cluesMucocutaneous triad (dystrophic nails, oral leukoplakia, reticular/lacy skin pigmentation), pulmonary fibrosis (common adult presentation), cirrhosis, AVMs, premature graying. Marrow failure.
DiagnosisTelomere length by flow-FISH (2- or 6-panel); <1st percentile is diagnostic (most sensitive). Chromosomal breakage (DEB) is normal.
Malignancy riskDeath from marrow failure (~60 to 70%), pulmonary disease (~10 to 15%), malignancy (~10%): head/neck SCC, GI cancer, lymphoma.
TreatmentDanazol improves counts and telomere length in ~2/3 (Townsley NEJM 2016); androgens; allo-HSCT with reduced-intensity conditioning (avoid worsening lung/liver fibrosis). Cancer screening.
SDSShwachman-Diamond syndrome Gene(s) / defectSBDS (7q11); ribosome assembly defect (40S and 60S joining into 80S).
Clinical cluesExocrine pancreatic insufficiency (steatorrhea, failure to thrive), skeletal deformities (thoracic dystrophy, metaphyseal dysplasia, short stature), immune/​endocrine/​cognitive dysfunction, recurrent infections. Variable neutropenia, mild anemia/​thrombocytopenia, occasional pancytopenia.
DiagnosisGene testing; note frequent benign clonal cytogenetic changes (20q-, isochromosome 7).
Malignancy riskHigh risk of MDS/AML.
TreatmentOral pancreatic enzyme replacement; supportive care; allo-HSCT for severe marrow failure or MDS/AML.
DBADiamond-Blackfan anemia Gene(s) / defectRPS19 (~25%) and other ribosomal protein genes; ribosomopathy.
Clinical cluesPure red cell aplasia of infancy (most diagnosed by age 2); macrocytic anemia with marked paucity of erythroid precursors (erythroid hypoplasia) in an otherwise normocellular marrow. ~50% have thumb or radius defects, craniofacial (cleft palate), GU or cardiac anomalies, short stature.
Diagnosis↑ RBC adenosine deaminase (eADA), ↑↑↑ Hb F.
Malignancy risk~5-fold increased cancer risk: colon, osteogenic sarcoma, AML/MDS.
TreatmentCorticosteroids (often responsive); chronic RBC transfusion plus chelation; allo-HSCT (OS ~90%). Anemia can spontaneously remit.
GATA2 deficiencyMonoMAC / Emberger Gene(s) / defectGermline heterozygous GATA2 mutation (zinc-finger transcription factor for hematopoiesis and lymphatics).
Clinical cluesMonocytopenia with disseminated nontuberculous mycobacterial infection (MonoMAC), HPV warts, PCP, herpesvirus reactivation; dendritic/​monocyte/​B/​NK cell deficiency; primary lymphedema (Emberger); pulmonary disease (PAP, MAI, bronchiectasis).
DiagnosisGene testing; MDS/AML often in the 2nd to 4th decade; cytogenetics -7 or +8.
Malignancy riskMost common cause of monosomy 7 MDS in adolescents/​young adults (>70%).
TreatmentAllo-HSCT is definitive (may need infection prophylaxis pre-transplant).
SAMD9 / SAMD9L Gene(s) / defectParalogous genes on chromosome 7q (antiviral immunity, growth suppression); gain-of-function.
Clinical cluesSAMD9: MIRAGE (myelodysplasia, infection, growth restriction, adrenal hypoplasia, genital phenotypes, enteropathy). SAMD9L: ataxia-pancytopenia; SAMD9L-associated autoinflammatory disease (SAAD).
DiagnosisGene testing; monosomy 7 / -7q associated.
Malignancy riskMDS/AML predisposition.
TreatmentAllo-HSCT.
TARThrombocytopenia with absent radii Gene(s) / defectRBM8A-related (bilateral radial aplasia with thumbs present).
Clinical cluesHypomegakaryocytic thrombocytopenia and bilateral radial aplasia; bleeding at birth.
DiagnosisClinical plus gene testing.
Malignancy riskLow.
TreatmentSupportive; thrombocytopenia often improves after infancy.
SCNSevere congenital neutropenia (Kostmann) Gene(s) / defectELANE (most common, autosomal dominant); HAX1 (original Kostmann).
Clinical cluesInfants/toddlers with omphalitis and recurrent infections; ANC <200/µL with otherwise normal CBC; marrow shows neutrophil arrest at the promyelocyte stage.
DiagnosisGene testing; note ELANE Gly185Arg (G-CSF resistance and high leukemia risk).
Malignancy riskProgression to MDS/AML; risk rises with higher G-CSF dose requirement (~40% at 10 years with G-CSF ≥8 µg/kg/day and poor response vs ~11% in good responders).
TreatmentG-CSF mainstay; allo-HSCT for refractory disease and do NOT wait until MDS/AML develops (much worse transplant outcome afterward).

Related marrow failure / predisposition entities

  • Congenital amegakaryocytic thrombocytopenia: >70% due to c-MPL (thrombopoietin receptor) mutations; most develop aplastic anemia by age 5 and need transplant.
  • MECOM syndrome: thrombocytopenia with radioulnar synostosis.
  • Wiskott-Aldrich syndrome: eczema, microthrombocytopenia, immunodeficiency (low IgM, high IgA and IgE, normal or low IgG, poor polysaccharide responses).
  • FPD-AML: RUNX1-associated familial platelet disorder with propensity to myeloid malignancy; single RUNX1 copy loss gives thrombocytopenia with variable penetrance; MDS/AML transformation in 20 to 60%.
  • ANKRD26-related thrombocytopenia: autosomal dominant gain of function; moderate thrombocytopenia, ~10% risk of myeloid malignancy (adults).
  • Familial AML with mutated CEBPA: autosomal dominant, nearly complete penetrance; a somatic second CEBPA hit drives MDS/AML in adolescents/young adults.
  • ETV6-associated familial thrombocytopenia and malignancy: autosomal dominant, often misdiagnosed as ITP, with red cell macrocytosis (usually without anemia); ALL in the young, and MDS/CMML/mixed phenotype in adults.
  • Benign constitutional neutropenia: homozygous ACKR1 (Duffy/DARC) SNP, linked to Duffy-negative red cells; partially malaria-protective; benign isolated neutropenia.

High yield (BMF)

  • Fanconi anemia = chromosomal breakage with DEB/MMC; FANCD1 = BRCA2; avoid full-dose alkylators/RT at transplant.
  • Dyskeratosis congenita = mucocutaneous triad plus short telomeres (flow-FISH <1st percentile); danazol can improve.
  • GATA2 = MonoMAC; mycobacterial/viral/fungal infections plus MDS/AML; most common cause of monosomy 7 MDS in AYA.
  • SCN (Kostmann): ELANE; AML risk especially with chronic high-dose G-CSF; transplant before MDS/AML develops.
  • AA workup: PNH flow plus telomere length plus BMF gene panel; Fanconi/telomere screening before IST.
  • AA treatment: matched sibling HSCT first-line for young patients; horse ATG plus CsA plus eltrombopag IST first-line for older patients or no donor; bone marrow (not PBSC) is the preferred graft source.
  • PRCA: parvovirus B19 (IVIG), thymoma association, check for LGL leukemia.
  • Transfusion: use irradiated, leukoreduced, CMV-negative products in HSCT candidates; avoid family donations.
Veli Bakalov MD, Board Review Notes 2026